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David J. Hannapel*DOI:&10.1111/j.10.00911.x
Journal of Integrative Plant Biology pages 40&52, Author Information
Plant Biology Major, 253 Horticulture Hall, Iowa State University, Ames, IA , USA*
*Corresponding author Tel: +1 515 294 9130; Fax: +1 515 294 0730; E-mail: . Available online on 6 January 2010 at http://www.jipb.net and http://www./journal/jipbPublication HistoryIssue published online: 11 JAN 2010Article first published online: 11 JAN 2010Received 28 Sept. 2009&Accepted 3 Nov. 2009
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CrossRef1David J. Hannapel, Plant Transcription Factors, 2016, 2Mingjie Li, Yanhui Yang, Xinyu Li, Li Gu, Fengji Wang, Fajie Feng, Yunhe Tian, Fengqing Wang, Xiaoran Wang, Wenxiong Lin, Xinjian Chen, Zhongyi Zhang, Analysis of integrated multiple &omics& datasets reveals the mechanisms of initiation and determination in the formation of tuberous roots inRehmannia glutinosa, Journal of Experimental Botany, 2015, 66, 19, 58373Claus Wasternack, How Jasmonates Earned their Laurels: Past and Present, Journal of Plant Growth Regulation, 2015, 34, 4, 7614Claus Wasternack, Miroslav Strnad, Jasmonate signaling in plant stress responses and development & active and inactive compounds, New Biotechnology, 2015, 5Yingzhen Yang, Linyong Mao, Yingyos Jittayasothorn, Youngmin Kang, Chen Jiao, Zhangjun Fei, Gan-Yuan Zhong, Messenger RNA exchange between scions and rootstocks in grafted grapevines, BMC Plant Biology, 2015, 15, 16James H. Westwood, RNA transport: Delivering the message, Nature Plants, 2015, 1, 4, 150387Jun Zhou, Hui Fang, Jianwei Shan, Xiaoxi Gao, Lin Chen, Conghua Xie, Tingting Xie, Jun Liu, A major QTL located on chromosome V associates with in vitro tuberization in a tetraploid potato population, Molecular Genetics and Genomics, 2014, 289, 4, 5758G. Kim, M. L. LeBlanc, E. K. Wafula, C. W. dePamphilis, J. H. Westwood, Genomic-scale exchange of mRNA between a parasitic plant and its hosts, Science, 2014, 345, 6198, 8089Sophia Sonnewald, Uwe Sonnewald, Regulation of potato tuber sprouting, Planta, 2014, 239, 1, 2710David M. Spooner, Marc Ghislain, Reinhard Simon, Shelley H. Jansky, Tatjana Gavrilenko, Systematics, Diversity, Genetics, and Evolution of Wild and Cultivated Potatoes, The Botanical Review, 2014, 80, 4, 28311B.-K. Ham, W. J. Lucas, The angiosperm phloem sieve tube system: a role in mediating traits important to modern agriculture, Journal of Experimental Botany, 2014, 65, 7, 1799Colin G. N. Turnbull, Rosa M. Lopez-Cobollo, Heavy traffic in the fast lane: long-distance signalling by macromolecules, New Phytologist, 2013, 198, 1Direct Link:13C. Wasternack, B. Hause, Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany, Annals of Botany, 2013, 111, 6, 1021Megan LeBlanc, Gunjune Kim, Beneeta Patel, Verlyn Stromberg, James Westwood, Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona, New Phytologist, 2013, 200, 4Direct Link:15Neal A.L. Cody, Carole Iampietro, Eric L&cuyer, The many functions of mRNA localization during normal development and disease: from pillar to post, Wiley Interdisciplinary Reviews: Developmental Biology, 2013, 2, 6Direct Link:You have free access to this content16William J. Lucas, Andrew Groover, Raffael Lichtenberger, Kaori Furuta, Shri-Ram Yadav, Yk& Helariutta, Xin-Qiang He, Hiroo Fukuda, Julie Kang, Siobhan M. Brady, John W. Patrick, John Sperry, Akiko Yoshida, Ana-Flor L&pez-Mill&n, Michael A. Grusak, Pradeep Kachroo, The Plant Vascular System: Evolution, Development and Functions, Journal of Integrative Plant Biology, 2013, 55, 4Direct Link:17Jianwei Shan, Wei Song, Jun Zhou, Xiaohuan Wang, Conghua Xie, Xiaoxi Gao, Tingting Xie, Jun Liu, Transcriptome analysis reveals novel genes potentially involved in photoperiodic tuberization in potato, Genomics, 2013, 102, 4, 388Gustavo G&mez, Vicente Pall&s, Viroids: a light in the darkness of the lncRNA-directed regulatory networks in plants, New Phytologist, 2013, 198, 1Direct Link:19Nina Aksenova, Lidiya Sergeeva, Oksana Kolachevskaya, Georgy Romanov, Bulbous Plants, 2013, 20N. P. Aksenova, T. N. Konstantinova, S. A. Golyanovskaya, L. I. Sergeeva, G. A. Romanov, Hormonal regulation of tuber formation in potato plants, Russian Journal of Plant Physiology, 2012, 59, 4, 45121B&n&dicte Charrier, Aude Le Bail, Bruno de Reviers, Plant Proteus: brown algal morphological plasticity and underlying developmental mechanisms, Trends in Plant Science, 2012, 17, 8, 46822P. Kittipadukal, P. C. Bethke, S. H. Jansky, The Effect of Photoperiod on Tuberisation in Cultivated & Wild Potato Species Hybrids, Potato Research, 2012, 55, 1, 27You have free access to this content23Chun-Ming Liu, A Bold Step Toward 2012, Journal of Integrative Plant Biology, 2011, 53, 12Direct Link:24Tae Kyung Hyun, Mohammad Nazim Uddin, Yeonggil Rim, Jae-Yean Kim, Cell-to-cell trafficking of RNA and RNA silencing through plasmodesmata, Protoplasma, 2011, 248, 1, 10125Phillip Harries, Biao Ding, Cellular factors in plant virus movement: At the leading edge of macromolecular trafficking in plants, Virology, 2011, 411, 2, 23726Jos& A Abelenda, Cristina Navarro, Salom& Prat, From the model to the crop: genes controlling tuber formation in potato, Current Opinion in Biotechnology, 2011, 22, 2, 28727C. Turnbull, Long-distance regulation of flowering time, Journal of Experimental Botany, 2011, 62, 13, 439928Chunyang Li, Mei Gu, Nongnong Shi, Hang Zhang, Xin Yang, Toba Osman, Yule Liu, Huizhong Wang, Manu Vatish, Stephen Jackson, Yiguo Hong, Mobile FT mRNA contributes to the systemic florigen signalling in floral induction, Scientific Reports, 2011, 1, 29Yan WANG, Hui XIE, Li-Ping CHEN, Progress in research on plant graft-induced genetic variation, Hereditas (Beijing), 2011, 33, 6, 58530Shweta Shah, Young-Jin Lee, David J. Hannapel, A. Gururaj Rao, Protein profiling of the potato petiole under short day and long day photoperiods, Journal of Proteomics, 2011, 74, 2, 212Roberto Ruiz-Medrano, Beatriz Xoconostle-C&zares, Byung-Kook Ham, Gang Li, William J. Lucas, Vascular expression in Arabidopsis is predicted by the frequency of CT/GA-rich repeats in gene promoters, The Plant Journal, 2011, 67, 1Direct Link:32Gustavo G&mez, Vicente Pall&s, Can the import of mRNA into chloroplasts be mediated by a secondary structure of a small non-coding RNA?, Plant Signaling & Behavior, 2010, 5, 11, 151733Debabrata Sarkar, Photoperiodic inhibition of potato tuberization: an update, Plant Growth Regulation, 2010, 62, 2, 117You have free access to this content34William J. Lucas, Plant Vascular Biology and Agriculture, Journal of Integrative Plant Biology, 2010, 52, 1Direct Link:35Biao Ding, Viroids: self-replicating, mobile, and fast-evolving noncoding regulatory RNAs, Wiley Interdisciplinary Reviews: RNA, 2010, 1, 3Direct Link:You have free access to this content36Ying Wang, Biao Ding, Viroids: Small Probes for Exploring the Vast Universe of RNA Trafficking in Plants, Journal of Integrative Plant Biology, 2010, 52, 1Direct Link:Sanwen Huang | LinkedIn
Sanwen Huang所在地区广东 深圳所属行业学术研究427 位联系人立即加入领英，查看Sanwen的完整资料。注册完全免费！加入领英，与全球超过 3 亿职场人士共同拓展人脉、分享创意、发现职场机会。浏览共同联系人获得引荐直接联系SanwenSanwen发布自我简介It is my belief that scientists should deliver the technological solutions to ensure the human right to food. Better seeds are the most critical factor in the global food security. In this perspective, my personal goal is to develop and disseminate the knowledge of genomics to breeders, who can make use this powerful tool to develop better seeds for farmers. I chose two crops for my pilot studies, cucumber and potato, as they represent two major types of crops, seed propagated and vegetatively propagated, and require different skills of breeding. In 2007, I organized the Cucumber Genome Initiative that consists 10 laboratories from China, US, Holland, and Australia. In two years, we successfully sequenced the cucumber genome that consists of 367 Million bases and opened a new frontier for de novo sequencing of large genomes using the extremely high throughput Illumina GA platform. We extend to transcriptome, germplasm genomics, mutant library, in order to assemble the resource to quickly identify trait genes for molecular breeding.I am also the steering committee member of the Potato Genome Sequencing Consortium, the international initiative to sequence the 830 Million bases of potato, the third most important food crop. We have finished in sequencing and annotation of the potato genome and discovered novel facts about the biology of potato tubers and inbreeding depression. Followup projects will help to develop tools for its molecular breeding.Now I coordinate a mega-project of the National Program on Key Basic Research Projects (the 973 Program), which focus on the study of genetic mechanism and molecular breeding of quality traits in major vegetables.From 2014, I act as co-founding director of Agricultural Genome Institute at Shenzhen, a new institute of the Chinese Academy of Agricultural Sciences. This new institute will employ 300 scientists and will be developed as the national research and development centre for agricultural genomics.工作经历Agricultural Genome Institute at Shenzhen, Chinese Academy of Agricultural Sciences中国 广东 深圳Chinese Academy of Agricultural SciencesPI of Vegetable GenomicsHead of Biotechnology Department at the Institute of Vegetables and FlowersSOL, the international consortium of genome research on SolanaceaeChinese Academy of Agricultural Sciences, Institute of Vegetables and FlowersPepper breederEstablish the laboratory for molecular breeding所做项目The Cucumber Genome InitiativeThe first genome project that use Illumina sequencing technology for large genomes. First of a vegetable species and several interesting discoveries related to the biology and evolution of plants. Published in Nature Genetics as cover article and editorial in 2009.团队成员:, Ruiqiang Li, Zhonghua Zhang, , Wei Fan, Jun Wang, Yongchen DuPGSC is an international initiative to decode the genome of potato, the third most important food crop. My team in China sequenced a monohaploid potato clone that is the simple version of the potato we eat, a critical contribution to the success of the consortium. The genome provides new insights into plant evolution and basic features of potato biology. It was published in Nature as cover article in 2011.团队成员:, Xun Xu, Robin Buell, Richard VisserThe genomics and molecular breeding of quality traits in vegetablesIt is a National Program on Key Basic Research Projects (the 973 Program), which focus on the study of genetic mechanism and molecular breeding of quality traits in major vegetables. I lead a team of 30 scientists with total budget of 38M RMB.团队成员:, many语言能力ChineseEnglish技能专长其他 12 个收起出版作品ScienceCucurbitacins are triterpenoids that confer a bitter taste in cucurbits such as cucumber,melon, watermelon, squash, and pumpkin. These compounds discourage most pests on the plant and have also been shown to have antitumor properties. With genomics and biochemistry, we identified nine cucumber genes in the pathway for biosynthesis of cucurbitacin C and elucidated four catalytic steps. We discovered transcription factorsBl (Bitter leaf) and Bt (Bitter fruit) that regulate this pathway in leaves and fruits, respectively. Traces in genomic signatures indicated that selection imposed on Bt during domestication led to derivation of nonbitter cucurbits from their bitter ancestors.作者:Nature GeneticsThe histories of crop domestication and breeding are recorded in genomes. Although tomato is a model species for plant biology and breeding, the nature of human selection that altered its genome remains largely unknown. Here we report a comprehensive analysis of tomato evolution based on the genome sequences of 360 accessions. We provide evidence that domestication and improvement focused on two independent sets of quantitative trait loci (QTLs), resulting in modern tomato fruit ~100 times larger than its ancestor. Furthermore, we discovered a major genomic signature for modern processing tomatoes, identified the causative variants that confer pink fruit color and precisely visualized the linkage drag associated with wild introgressions. This study outlines the accomplishments as well as the costs of historical selection and provides molecular insights toward further improvement.作者:PLoS GeneticsNuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to their asexual nature and absence of a single cell stage with only one nucleus. This has raised fundamental questions concerning speciation, selection and transmission of the genetic make-up to next generations. Although this concept has become textbook knowledge, it is only based on studying a few loci, including 45S rDNA. To provide a more comprehensive insight into the genetic makeup of arbuscular endomycorrhizal fungi, we applied de novo genome sequencing of individual nuclei of Rhizophagus irregularis. This revealed a surprisingly low level of polymorphism between nuclei. In contrast, within a nucleus, the 45S rDNA repeat unit turned out to be highly diverged. This finding demystifies a long-lasting hypothesis on the complex genetic makeup of arbuscular endomycorrhizal fungi. Subsequent genome assembly resulted in the first draft reference genome sequence of an arbuscular endomycorrhizal fungus. Its length is 141 Mbps, representing over 27,000 protein-coding gene models. We used the genomic sequence to reinvestigate the phylogenetic relationships of Rhizophagus irregularis with other fungal phyla. This unambiguously demonstrated that Glomeromycota are more closely related to Mucoromycotina than to its postulated sister Dikarya.作者:Nature GeneticsMost fruits in our daily diet are the products of domestication and breeding. Here we report a map of genome variation for a major fruit that encompasses ~3.6 million variants, generated by deep resequencing of ??5 cucumber lines sampled from 3,342 accessions worldwide. Comparative analysis suggests that fruit crops underwent narrower bottlenecks during domestication than grain crops. We identified ??2 putative
? of these regions contains a gene involved in the loss of bitterness in fruits, an essential domestication trait of cucumber. We also investigated the genomic basis of divergence among the cultivated populations and discovered a natural genetic variant in a b-carotene hydroxylase gene that could be used to breed cucumbers with enhanced nutritional value. The genomic history of cucumber evolution uncovered here provides the basis for future genomics-enabled breeding.作者:Nature GeneticsCucumber is an economically important crop as well as a model system for sex determination studies and plant vascular biology. Here we report the draft genome sequence of Cucumis sativus var. sativus L., assembled using a novel combination of traditional Sanger and next-generation Illumina GA sequencing technologies to obtain 72.2-fold genome coverage. The absence of recent whole-genome duplication, along with the presence of few tandem duplications, explains the small number of genes in the cucumber. Our study establishes that five of the cucumber's seven chromosomes arose from fusions of ten ancestral chromosomes after divergence from Cucumis melo. The sequenced cucumber genome affords insight into traits such as its sex expression, disease resistance, biosynthesis of cucurbitacin and 'fresh green' odor. We also identify 686 gene clusters related to phloem function. The cucumber genome provides a valuable resource for developing elite cultivars and for studying the evolution and function of the plant vascular system.作者:NaturePotato (Solanum tuberosum L.) is the world's most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop.作者:, The Potato Genome Sequencing ConsortiumNatureTomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera1 and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium2, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.作者:, The Tomato Genome Sequencing ConsortiumNature GeneticsWatermelon, Citrullus lanatus, is an important cucurbit crop grown throughout the world. Here we report a high-quality draft genome sequence of the east Asia watermelon cultivar 97103 (2n = 2× = 22) containing 23,440 predicted protein-coding genes. Comparative genomics analysis provided an evolutionary scenario for the origin of the 11 watermelon chromosomes derived from a 7-chromosome paleohexaploid eudicot ancestor. Resequencing of 20 watermelon accessions representing three different C. lanatus subspecies produced numerous haplotypes and identified the extent of genetic diversity and population structure of watermelon germplasm. Genomic regions that were preferentially selected during domestication were identified. Many disease-resistance genes were also found to be lost during domestication. In addition, integrative genomic and transcriptomic analyses yielded important insights into aspects of phloem-based vascular signaling in common between watermelon and cucumber and identified genes crucial to valuable fruit-quality traits, including sugar accumulation and citrulline metabolism.作者:, Shaogui Guo, Yong Xu etcNature GeneticsWe report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein coding genes in the B. rapa genome, which has undergone genome triplication. We used Arabidopsis thaliana as an outgroup for investigating the consequences of genome triplication, such as structural and functional evolution. The extent of gene loss (fractionation) among triplicated genome segments varies, with one of the three copies consistently retaining a disproportionately large fraction of the genes expected to have been present in its ancestor. Variation in the number of members of gene families present in the genome may contribute to the remarkable morphological plasticity of Brassica species. The B. rapa genome sequence provides an important resource for studying the evolution of polyploid genomes and underpins the genetic improvement of Brassica oil and vegetable crops.作者:, The Brassica rapa Genome Sequencing Project ConsortiumAn integrated genetic and cytogenetic map of the cucumber genomePLoS ONe作者:PLoS OneKnowing the extent and structure of genetic variation in germplasm collections is essential for the conservation and utilization of biodiversity in cultivated plants. Cucumber is the fourth most important vegetable crop worldwide and is a model system for other Cucurbitaceae, a family that also includes melon, watermelon, pumpkin and squash. Previous isozyme studies revealed a low genetic diversity in cucumber, but detailed insights into the crop's genetic structure and diversity are largely missing. We have fingerprinted 3,342 accessions from the Chinese, Dutch and U.S. cucumber collections with 23 highly polymorphic Simple Sequence Repeat (SSR) markers evenly distributed in the genome. The data reveal three distinct populations, largely corresponding to three geographic regions. Population 1 corresponds to germplasm from China, except for the unique semi-wild landraces found in Xishuangbanna in Southwest China and East A population 2 to Europe, America, and Central and West A and population 3 to India and Xishuangbanna. Admixtures were also detected, reflecting hybridization and migration events between the populations. The genetic background of the Indian germplasm is heterogeneous, indicating that the Indian cucumbers maintain a large proportion of the genetic diversity and that only a small fraction was introduced to other parts of the world. Subsequently, we defined a core collection consisting of 115 accessions and capturing over 77% of the SSR alleles. Insight into the genetic structure of cucumber will help developing appropriate conservation strategies and provides a basis for population-level genome sequencing in cucumber.作者:Molecular isolation of the M gene suggests that a conserved-residue conversion induces the formation of bisexual flowers in cucumber plantsGenetics作者:, Run CaiCentromere repositioning in cucurbit species: Implication of the genomic impact from centromere activation and inactivationPNAS作者:, Weiwei JinComparative genomics enabled the isolation of the R3a late blight resistance gene in potatoPlant Journal作者:The discovery and characterization of the major late blight resistance complex in potato-genomic structure, functional diversity, and implicationsWageningen University Press作者:教育背景Ph.D., Plant Breeding社团活动: Chair of the Chinese Association of Students and Scholars in Wageningen ()BSc and MSc, Horticulture and Biotechnology社团活动: University Table Tennis Team查看Sanwen的完整资料并...浏览共同联系人获得引荐直接联系Sanwen不是您要找的Sanwen？访客还看了位于中国的领英会员: